NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10022938

Scaffold Ga0244775_10022938


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10022938 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5642
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (87.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002515Metagenome / Metatranscriptome552Y
F007263Metagenome / Metatranscriptome354Y
F051126Metagenome / Metatranscriptome144Y
F071231Metagenome / Metatranscriptome122N

Sequences

Protein IDFamilyRBSSequence
Ga0244775_100229381F071231N/AMMTRKDYVKVAEILSNYFATSVFDEQGEILFADLVDEFSLMFESDNERFDANRFAIACYKELEMSK
Ga0244775_100229383F051126AGCAGGMSAKPYTIQDLLVGKYYRSHSRHDEGAILYATPRPEIWYGSDFEAYAIEVRSTRGIKNFWATVAVKVGA
Ga0244775_100229384F007263AGGMIKEYLDETEFYFILDEQRYCCDESQFKHVCKAHGETMGCYFCEFDYSTTCEEQH
Ga0244775_100229389F002515N/AMKKSKEELRRLMELRRSNAASAVPSKKAYTRKGRKCQSEMLYLKENN
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