NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10015625

Scaffold Ga0244775_10015625


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10015625 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7050
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (15.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008423Metagenome333Y
F024312Metagenome206N
F038998Metagenome164N
F059001Metagenome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0244775_1001562512F059001N/AMNRLKTPQEKANERYAQESIKPMYAFIIVLFAFLITAILQNI
Ga0244775_1001562515F008423GAGMLLQLLKEAQGRQNLFEADLAEWRRGLDDTRTMISEEDLLIKIARMNDIQRRILKSYHYLILDLYTLTEEFMLPINLLHF
Ga0244775_1001562518F024312N/AMTPLNRLWDLREEVKFWNYKVETSYPQNASEMINQLNAAKYKLKLHKQLHFPELLNQPKRDYIPYEMLSDKFEVFENYLND
Ga0244775_1001562519F038998N/AMIVLNICKEDINWKEAKNGKNYANVATDFLKEPDDKGNTHTVWNNQSQEERAEKAKKSYCGRGKQVSFNAPTAKKEYAVNQQESEDDLPF
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