NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10012647

Scaffold Ga0244775_10012647


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10012647 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7959
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (88.24%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000256Metagenome / Metatranscriptome1448Y
F005843Metagenome / Metatranscriptome388Y
F009460Metagenome / Metatranscriptome317N

Sequences

Protein IDFamilyRBSSequence
Ga0244775_1001264713F009460AGGAMAKWDLSKIENCSTVGSDIDEDDTTPDQPTPLMIIRSINRKADIIRMDAARKPERNTMKQRAEEIMSLCKMLQRRMHNG
Ga0244775_1001264715F005843GGAGGMTLVEPVFMAFVIFSSPDECKEFAEYYDLARIFEPQCVEMGGEAEYRRPYPDIKPKQRPIQESSG
Ga0244775_100126477F000256GGCGGMADGVSGIGSAPFNVQSDIHQQTQTRERVEAHLVEQRVAKKHRANHTHLEALREQKLDLGKAYDRFGAKTTADRPQGTNINIEV
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