| Basic Information | |
|---|---|
| Taxon OID | 3300024346 Open in IMG/M |
| Scaffold ID | Ga0244775_10007316 Open in IMG/M |
| Source Dataset Name | Whole water sample coassembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10835 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (70.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Columbia River Estuary | |||||||
| Coordinates | Lat. (o) | 46.234 | Long. (o) | -123.9135 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001106 | Metagenome / Metatranscriptome | 776 | Y |
| F009961 | Metagenome / Metatranscriptome | 310 | Y |
| F012456 | Metagenome / Metatranscriptome | 280 | Y |
| F057380 | Metagenome / Metatranscriptome | 136 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0244775_100073162 | F001106 | AGGAG | MSFETLKVAELRKIAEDFAVDTDGIKSKTDIVAALAEEGVTWSVYQKTIKDIEDATDEFNEDAEEILPRFNLDAQPEDTVLVRMTRENFRFDIIGFTFTKEHPFIAMTEENAQEIFDKEEGFRLATPKEVQEYYN |
| Ga0244775_100073163 | F057380 | N/A | MAEIYVNSNSPIKTKIYWEGELITPSSVVTAKIYDITKDPTNVILPTTILTTINATAVETDIGTYQIVLPFSYSSYPRNFKIVWQYTVHGGAVGTHTTYANVVTPYININEEIEDLNFGADPSDPNYKTYANLQSAERYARKIIEDYTNQDFYLYAGEESIYGNESDTLPMPSKVNKIYKIYSNDILLVDNLSTPKVNNWLYDPIVSESGFAIRVDRTDLLDNAVYVANGLVPPTITDTFYGVFSKDVKYRVVGQFGWESVPDKVQLATVELMKDYFSKDKVWRNKYIKSIKTFDWSFEYNASASKGTGNLYVDQLLNPYVITQMVLI |
| Ga0244775_100073165 | F012456 | GGAG | LDSSVALLQASSGLERLMAGSVPGVIKDSTVAQISAFLYYEAAVLSKLTSNAEFKNLFKTTIFNQIEKDFGQYVDAQARTKPKSLHHVYEWNKTGNPSFRLFDLYLIDTGGLSFRIGRDFKLSKSAVPSKNKKQKRKYVFSNKATVMEEGMPVVIRPKSAERLVFELDGATVFMPKGTSVTVKRPGGRAATNQFALTYGRFFGGQLVNSSIRSSGFQRIFNAKIARTLNVPINIKKVQYSFSAGKIRMQADAALSSSFGGSL |
| Ga0244775_100073166 | F009961 | GGAGG | MTVDYKIDAMFELRKFLWAQLKLTGMFNQNDYYSDNLGTEIIPIVPVQQLPEMDQFLNGKKHIVYDKIGLSYEENWLICCEKVLFTIYSTDVTEIYEMRNLMTDLFRRMDESAKDVNASKTSNKLIFHSIHITETSPIEPSQELQGFLSADVILEVKYSRVTDRLGRFA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |