NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10001632

Scaffold Ga0244775_10001632


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10001632 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25637
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (89.19%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033956Metagenome / Metatranscriptome176Y
F064878Metagenome / Metatranscriptome128N
F087772Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0244775_1000163220F087772GGAGGMKHLQITQRILDCEENGWNDLLVKIDNITQSIIDSPSAVFQIKIALIYWCDAVDIRLNALPPDEEEVILHNPSMNHEQTFGTEA
Ga0244775_1000163225F033956GGAMAEAALTSYEFSCCWKRAFEEACDFAADEFGVKATKAQAATAINIAKTGWEGIRQSVKTIIYS
Ga0244775_1000163232F064878AGGAGGMVLIPNKANHQKAMEMATNKAFNGKTMLDNGSGQYAGNLAELMFKDLLDEQYLEYDYTAATSFHFDFKIGKATVDLKAKQRTVDCQDSYDTHVNLYQKDYPCHYYIFASVLIPKGEKLATKVQFMGWCSKEDYWATCEIKRKGQNSDGLIEREDGGKKKYHDLKPMSLFMANIEKHLYQLAFGD
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