| Basic Information | |
|---|---|
| Taxon OID | 3300024346 Open in IMG/M |
| Scaffold ID | Ga0244775_10000856 Open in IMG/M |
| Source Dataset Name | Whole water sample coassembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 36930 |
| Total Scaffold Genes | 57 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 48 (84.21%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Columbia River Estuary | |||||||
| Coordinates | Lat. (o) | 46.234 | Long. (o) | -123.9135 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001991 | Metagenome / Metatranscriptome | 607 | Y |
| F002997 | Metagenome / Metatranscriptome | 514 | Y |
| F006660 | Metagenome | 367 | Y |
| F022651 | Metagenome / Metatranscriptome | 213 | Y |
| F051929 | Metagenome / Metatranscriptome | 143 | Y |
| F092064 | Metagenome / Metatranscriptome | 107 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0244775_1000085626 | F051929 | AGG | MTEQRYLAGGQEFYYPHAGDPPAPENTKLLLLTTGGICTTGTWNNNWCIGWLPLPKRNMTKEDMK |
| Ga0244775_1000085634 | F001991 | N/A | VRGASPPEFRGTILAIFNQNTLTQVSGFSNPIIAGELVYNQKTYWNLSMTANGSPVSLVGATIDASILRRSVTNITDTRNGLTFDIADYEPAPTPVALTISNRVDASGTFTLVIDESTWSVLSNDPELDINAQNCVGFSGRIKIGFPAVGATPADDGIIFLLFLVRSDGVYN |
| Ga0244775_1000085639 | F006660 | GGAG | MSFQTIFDISQSIGVQNRRTIGQQVSRSGQVRVAQYLTSVPWQFTVKPHNYLYYPQVRGVIQTIDNYDRQIPQTITFAGTGLNWFTAYQGGLTLGQVSALTLASVPATNATTITVGNLPSVTSGVVIFAAGDFIQLGSYTYKVTAQVLRGVGVTVPVTLHRPVIGSVSVGTLTAVGSACTFYLLAAQCPTYTLNPMTNGAFVQWDGDFVFIEDIIG |
| Ga0244775_1000085643 | F022651 | N/A | MTQQTTIQNTGDLLSFLAKQSETRKDWFGFMQQRMTAVTLAHEIAKHHAHHMSPGEVVAYALALNQEIFNKIIKG |
| Ga0244775_1000085649 | F002997 | N/A | MAIARFENLTVNNLTFGQSTFGEQATTQTLWFITRGRVHAVANNVKITEKYRVYSDVVEFTLNYTPNIKTIIDNQNLYSITWRGFDWRIDNVREADDRMSALFLCVRNDPLTAV |
| Ga0244775_1000085656 | F092064 | GAG | MRAAPRQIIEFLRDPMKWEEKSFETAIRNEVENNTGNITASDELLIGSLVMVVGTMITAHVRILDTGLTYEFHSGEAPSAWYKIRTESLDKAIKILAELALVARGRPKKSNKVSDVDELFASA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |