NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244775_10000092

Scaffold Ga0244775_10000092


Overview

Basic Information
Taxon OID3300024346 Open in IMG/M
Scaffold IDGa0244775_10000092 Open in IMG/M
Source Dataset NameWhole water sample coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)113108
Total Scaffold Genes177 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)127 (71.75%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameUSA: Columbia River Estuary
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000441Metagenome / Metatranscriptome1136Y
F002598Metagenome / Metatranscriptome544Y
F003408Metagenome / Metatranscriptome488Y
F011299Metagenome / Metatranscriptome292Y

Sequences

Protein IDFamilyRBSSequence
Ga0244775_10000092133F003408GAGLEDNLSMPELIQTFTSMQKSESEKRKFLAAIQGVDLEGGQEEETSSFEDVRRRALGITADATDVVSLQGQFASEAGFGIGAGLGYKKE
Ga0244775_1000009255F000441GGAGGMSDNYINDQLNKAQKLLWGGSETENIEAHNIISKLIKDRVEQTDQI
Ga0244775_1000009276F011299N/AMTRKHFEATAEILKFASDKTHPAVFSKMVNDFALIFAKENPNFNVNKFHEACGYHVPNLSSR
Ga0244775_1000009281F002598N/AMSTITTTKEGLPMATKLYTIESLLVGKNYRSNSRHFSGEIVSAEHRPEIYYGEKTEAYLIEVRAGGLQNKFATIAVKVGE
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