NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209992_10037877

Scaffold Ga0209992_10037877


Overview

Basic Information
Taxon OID3300024344 Open in IMG/M
Scaffold IDGa0209992_10037877 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2394
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameKolumbo volcano, Aegean Sea
CoordinatesLat. (o)36.5264Long. (o)25.4868Alt. (m)Depth (m)470
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000613Metagenome / Metatranscriptome985Y
F002192Metagenome / Metatranscriptome585Y
F017146Metagenome / Metatranscriptome242Y

Sequences

Protein IDFamilyRBSSequence
Ga0209992_100378772F002192N/AMDQILLYSSLTIAILALFFALYAGVRVGQMINASKDLDWTAVANLTGDIASTKKTIQTLNNRINGMHSPKLADQELMLQLLQNKEKPKTHSNVINSVGKWV
Ga0209992_100378774F000613AGGAGMPIVKKKISVAAGATSDQVLAGTTYEYVDQGTRIVVAAAVDTAGTATADTTMDFTVNNAEFAKDASVSTLVTGQPFGWNNTGYVMSDMVTTGAVRNRPVIQFKNGTAGTRTVDCAIFIGN
Ga0209992_100378775F017146N/ALAGSSPGVRITRKMKSQYRAVLNLAGGNYQMAADMIGVSDDFFIAVMLKRFRNDGPVVTKAALRKTKTTVRRLKSMCDMYDSLRPTATRRRAPMRRAATTLISNK
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