NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209992_10022665

Scaffold Ga0209992_10022665


Overview

Basic Information
Taxon OID3300024344 Open in IMG/M
Scaffold IDGa0209992_10022665 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3352
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameKolumbo volcano, Aegean Sea
CoordinatesLat. (o)36.5264Long. (o)25.4868Alt. (m)Depth (m)470
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001242Metagenome / Metatranscriptome739Y
F021868Metagenome217Y
F025380Metagenome202Y
F099858Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0209992_100226651F021868GAGMTTMTPELKTFMNNLWGAEGTMIDTPLGRGWIANVRTKAGIDLEVMVAIPDIDGFTLFNGMELFDMKEGRA
Ga0209992_100226652F001242GAGGMILTLKGKTNHGKNRIREHGTEWKVLGLPEGVIAMMPTPRFPTIKSLKTGEMRWLDEKNFEIISERE
Ga0209992_100226653F099858AGTAGMTIDIMDINPIVNVGTAKNPMHVLDCTWMTVLYEKATGKTFKGDDDYVNFCDKFVKEYNEGGFDTTLAIKKVMK
Ga0209992_100226654F025380AGAAGGMVTLGTKIIGDFGGYTELYNGEVVTIENFSVGPREKEVKVKWDNGSHTWMLASEIDAKKGIGYFTEEGYYE
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