NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209992_10009901

Scaffold Ga0209992_10009901


Overview

Basic Information
Taxon OID3300024344 Open in IMG/M
Scaffold IDGa0209992_10009901 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5982
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (61.54%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → environmental samples → uncultured virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameKolumbo volcano, Aegean Sea
CoordinatesLat. (o)36.5264Long. (o)25.4868Alt. (m)Depth (m)470
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021555Metagenome / Metatranscriptome218N
F056059Metagenome138Y
F071305Metagenome122N

Sequences

Protein IDFamilyRBSSequence
Ga0209992_100099015F021555AGAAGMQTTKISEDKFHIFLDKQIEEYKSRRGRAFFYKKPKNKFETLGEKRIMRFDTRYREFQVDGATGKRIVPKGKKRTTTPDKNMKVYDLDIKEGNKIRNVPLNHRLKYLLIGKKCLKISYLGDYHTFKVEFPKLTRDLIKKLYAKEFEDKENNNE
Ga0209992_100099016F056059AGGAGMTTNKIEDSGISLTKPKDITPENIKDNIISDDELRKKIIDGTLVDDKLEATLFPNGRKK
Ga0209992_100099017F071305N/AMFELFIFLFTDVDNRIGNFHTLKQKFDTYEHCIEYVKKNRIDSSDDTGQIFIPTNQIIGLTWCRPVDTQE
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