| Basic Information | |
|---|---|
| Taxon OID | 3300024343 Open in IMG/M |
| Scaffold ID | Ga0244777_10005653 Open in IMG/M |
| Source Dataset Name | Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8106 |
| Total Scaffold Genes | 12 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (25.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Columbia River Estuary, USA | |||||||
| Coordinates | Lat. (o) | 46.234 | Long. (o) | -123.9135 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006345 | Metagenome / Metatranscriptome | 375 | Y |
| F021096 | Metagenome / Metatranscriptome | 220 | N |
| F040589 | Metagenome / Metatranscriptome | 161 | Y |
| F060705 | Metagenome / Metatranscriptome | 132 | N |
| F064517 | Metagenome / Metatranscriptome | 128 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0244777_1000565310 | F040589 | N/A | MSLAQTALLASAIRPKSDSTPAARPSSIVESIAQRPIQWLIVAGAVVYFGGKFIKNVIPTGDNIRKGEAETTTSTDNPWSATTFLAQKIPVGTNLMTAAGAMQQAKKIYDSLNTYFSDDADIAVGVFAALPSKVQVALVVKSFEATYKRNILEYLKSGKKTFDFGTGGISDALYNRIIENVKRKPKF |
| Ga0244777_1000565311 | F060705 | N/A | MAISSLNFIISQFESEKYRYYAIYDEDGDRVYTQNDLIDVENAINKLRSFFKDNQGYFTIRVFSKKLSDKNNLIARDNSTIAKYNVEVSVPVLPQGVNGLSGMGGNSMLPPDDPRSNAPNMFQLLGAMSQVEQNMKLMEKDHAHYREMKELQDRIAKMEENEGKSKGMGAIVDRLGEQFTDPNVLLGLISGVSQLFKKEAVAPMHGISRDDIMPMNGIDEEVINNISTRREKMVSAVNSLMQHDANFPENISKLAELAKNKPAIYSMAVSYLNNL |
| Ga0244777_1000565312 | F021096 | N/A | LCKDYTAIEGEMSTLVTLSFPNTGDYQRAYYFASNTMLDGQNATITAIEVVLSTELTRLPSGEFNVDSSILPNGVLYVSNLKRQIIATLPLYGLQRTANNGKATFTYFNDQVWQNCYVEFTSTGFTTPITPLTFRVYYVPKIKN |
| Ga0244777_100056533 | F006345 | N/A | MKTENAIQILKEALHIAISKGCFGLVETTNIVKALEHLESQPDIQFGEITED |
| Ga0244777_100056538 | F064517 | N/A | MARTTTENIYYGRSQQITADGCFAISFFRPSTSNPVNVAGIPLEAGQTLSIKQNVGDEDWSTYEIVFSTGAFTNEMYVTKIMPLTRG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |