NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244777_10003028

Scaffold Ga0244777_10003028


Overview

Basic Information
Taxon OID3300024343 Open in IMG/M
Scaffold IDGa0244777_10003028 Open in IMG/M
Source Dataset NameCombined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11326
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (89.29%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F001460Metagenome / Metatranscriptome690Y
F007468Metagenome / Metatranscriptome350Y
F020171Metagenome / Metatranscriptome225Y
F021481Metagenome / Metatranscriptome218Y

Sequences

Protein IDFamilyRBSSequence
Ga0244777_1000302810F007468GAGGMLNQFIEYMKIHLISLNQDLEMNPESINVIDIPGQIEATRHLLSVATDILNEDVQGKGY
Ga0244777_1000302811F001460GGAGGMLGYTEADLNRMTNAVHDAKLFYLKYPSDLLDKSELVNDLQDTVSFLQGLWAEGYFDNA
Ga0244777_1000302812F020171AGGMAEQFIDTVAEHITGAMEQEIAEHLYEQWTLKNLDEGSHYAEREFMEWASDELKVQYNNYYGLSSGDADFYEVTD
Ga0244777_1000302824F021481AGAAGGMSPILDVTKGKFYRLGDTFTTGKSGVTGSIREIVSVRPNLTKLSLQTENGMRWAMVKIGA
Ga0244777_100030289F000263GGAMETDTTLLPPHLQRLVDAGVSGTDILHGHLKFMMLEAEQILDNCIEVEEESGEAMDSMERTNAEGFLDALVQVYQLTYQLAFAISERTKARESR
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