| Basic Information | |
|---|---|
| Taxon OID | 3300024323 Open in IMG/M |
| Scaffold ID | Ga0247666_1000002 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK07 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 289704 |
| Total Scaffold Genes | 282 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 172 (60.99%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Indiana | |||||||
| Coordinates | Lat. (o) | 40.4449 | Long. (o) | -87.0297 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002324 | Metagenome | 571 | Y |
| F008640 | Metagenome | 330 | Y |
| F010845 | Metagenome / Metatranscriptome | 298 | Y |
| F013826 | Metagenome / Metatranscriptome | 268 | Y |
| F095945 | Metagenome | 105 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0247666_1000002164 | F008640 | AGGAGG | MDENTRSRIRQIFLSPRPNLALLIAAELLGMTLKELKREIEDGVIVTVSTALGQRMARQELVAVAMRVWEQAVIEEALGEDATSVLPDAIRLVELRAGVPRYQRTMLRVLAQREGTSVDAILTRELDDVASAHAEELAAAMPELEMALAWPG |
| Ga0247666_1000002203 | F095945 | GGA | MIAVLALFFATAFPSNSRTSWMRPESFHLTIGMSRAAAVHALESNGWKTKRGDGENQLVVEYADDKSLTLQFERERLKSARFELFTILQDAPKAFDEEWAYLHEALGKPRMKSQKIVLYDQILPNVMAVLSADPKSEQAQKGVGMLVVRYYDPAK |
| Ga0247666_100000228 | F013826 | GGA | MAVCWRCPLCSEVSCEDDVNATGNPVACDHCERAFPPQETLCSVCDAPNPWQRRDTLHFLCRECGTTQTYFSHLPIAG |
| Ga0247666_1000002282 | F002324 | GGAGG | MGETKLFQVCYEGELTIDVSNAMRRLGAEPNFDQSWHVWVPDGGHAELIVRYLRMEVGIAARVLVGCAQFTTSRDFLLIRHSLTPGADYSDLHDAIARLGVVVELPFESTFVVQSPDTTDVQTLGEALGELCPDDALMVTGISHDWAYCDGTTSRMNVAALEPRELQFRTF |
| Ga0247666_100000294 | F010845 | N/A | MVLLVAACQKAEPLTAAKAEQILASSRFEAEPIYAEVPQKVWWNAHFPKDEFDERSLRTFDNLTKAGLITVTGGPTPDGAAYVAKTTQKGFPVLGTAPSARGPVFRGLICYKVYDGLRNFQRHPTEPTTGHGELAWHYTKPTPLYPMFETKQNKPLDKTFLSLVSFYYKDHQWQFDVTVRKTEAE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |