| Basic Information | |
|---|---|
| Taxon OID | 3300024314 Open in IMG/M |
| Scaffold ID | Ga0228657_1066322 Open in IMG/M |
| Source Dataset Name | Seawater microbial communities from Monterey Bay, California, United States - 70D |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 756 |
| Total Scaffold Genes | 2 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 36.8313 | Long. (o) | -121.9047 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005298 | Metagenome / Metatranscriptome | 405 | Y |
| F051050 | Metagenome / Metatranscriptome | 144 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0228657_10663221 | F005298 | GAGG | MAPVRIVLLNIMSGFSLATLIVVGVLYVSFDNAFVFTDTEIGITNNPITKDKDIEFYMVGSKKFQCNSTAVYGVAHAVDGSHSHDLNTFTKRYIQATSPGERVENGWHMAVPSDMKEGGEYRVSMTGEFECVHLIFKTQKVQE |
| Ga0228657_10663222 | F051050 | N/A | RYQKARKYTLKKTDIKIEKQVARWDLYAKIAPTIFLVVGGISLAIGITSFDTLFNIGMILFAFTAVTWWFWTIITVKYIIRTMSSATTNLLEVKQDLKDIRKTLEEEQNGPS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |