NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224556_1174086

Scaffold Ga0224556_1174086


Overview

Basic Information
Taxon OID3300024295 Open in IMG/M
Scaffold IDGa0224556_1174086 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 S3 1-5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)527
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003000Metagenome / Metatranscriptome514Y
F008831Metagenome / Metatranscriptome327Y

Sequences

Protein IDFamilyRBSSequence
Ga0224556_11740861F003000N/AMKANTQLDEMHDRLIEFHLRSPKERIGDVLLRWVEDPLKPRDERGRFRVNPILLLLAIVFAL
Ga0224556_11740862F008831N/AFRTRGMVFLRYTIENHSNLFYRINTPGAYELKIGDSPISLASVAHTQLDRAVLEQLGGTQELALPVDLAETEADDLHPGESTQGVVSIRQDLKSLAVVQLVFRDGVKATVVL

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