Scaffold Ga0224556_1005950

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0224556_1005950

Scaffold Ga0224556_1005950

Overview

Basic Information
Taxon OID	3300024295 Open in IMG/M
Scaffold ID	Ga0224556_1005950 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 1-5
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3346
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Norrbotten County, Stordalen Mire
Coordinates	Lat. (^o)	68.3532	Long. (^o)	19.0475	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005732	Metagenome / Metatranscriptome	391	Y
F097837	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224556_10059501	F097837	AGGAG	MPFLPCFLCVEKLEKRTDKNGKPYFVCNPCGIQLFVRRPHGIKLLNKLLSDVARNELPFKHRAEEVHKIQALLSEIEGVKKQIERLESQISFLFGDTDKVRACKLLKTKLENLFKELEQLAEIKPVILSPLI
Ga0224556_10059505	F005732	N/A	MGKFSPTKLHGDCEEIAHPSTAYGRRRRNWIDAHGSVPPRQVVDASCGNKNCIALRHSYLRPRVEQPGKYPKIAKRVHRLKIGQHFDVPGVGTNERSRNRFRSGLYAAVRLDKVSVRGQPDGSVRVTKVGEWSSVRA

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