| Basic Information | |
|---|---|
| Taxon OID | 3300024277 Open in IMG/M |
| Scaffold ID | Ga0255207_1018550 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Miss_RepA_8d |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1138 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Louisiana | |||||||
| Coordinates | Lat. (o) | 29.8571 | Long. (o) | -89.9778 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000473 | Metagenome / Metatranscriptome | 1097 | Y |
| F002060 | Metagenome / Metatranscriptome | 597 | Y |
| F074876 | Metagenome / Metatranscriptome | 119 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0255207_10185502 | F002060 | AGG | MDYTSIVLAISAAILSGMGTAIISGIKESKKEKNRQKEREQDLLKLEIKDLKISLYKLERDLTDWKDKYYNAIQDLIVVKAELENALVQLNLVELNELDSEI |
| Ga0255207_10185504 | F074876 | GGAGG | VKEYYEIINIVYIYSEKLHGTVEQLGAFASMVKYQKDGMNYEVLLENDEFAIVDEIVFHHVEENNE |
| Ga0255207_10185505 | F000473 | N/A | NQWTGEPNKPVFYTEEMKKRVREIKKPMLLLMDVAMYPDFLALRLYEDNFLQFDGSKKEEVIDYVSKVKKLIESYGVRCELEGVPSERVL |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |