| Basic Information | |
|---|---|
| Taxon OID | 3300024277 Open in IMG/M |
| Scaffold ID | Ga0255207_1003829 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Miss_RepA_8d |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2930 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (33.33%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Louisiana | |||||||
| Coordinates | Lat. (o) | 29.8571 | Long. (o) | -89.9778 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000473 | Metagenome / Metatranscriptome | 1097 | Y |
| F000671 | Metagenome / Metatranscriptome | 945 | Y |
| F002060 | Metagenome / Metatranscriptome | 597 | Y |
| F003582 | Metagenome / Metatranscriptome | 478 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0255207_10038292 | F002060 | N/A | MQIDYITVTLTLLAAILSGFATAILAGIRDAKKEKIRREERDKDHLKMEVKDLKIDLYKLEKELTEWKDKYYEAIQELITLKSELENALTMLNHIEIHEDLDSEYLK |
| Ga0255207_10038293 | F000671 | AGGAG | MEKILCYSCNKTKNKLNVRRSSLLPINLFLCQTCIDQKLEPRWVVLISGRQNGHEHVKEFVQKKRYIGSEITAAELLI |
| Ga0255207_10038295 | F000473 | N/A | MFGNRLGKSMPSNLYDNKYFKHGVNLWTGEPNKPVFYNEEMKKKLREIKKPLLLMMDVVKYPDFLALRLYEDNFIQFSGTKKEEAIDYVMKVKKMIESYGVRCELEGVPGGRTIT |
| Ga0255207_10038299 | F003582 | N/A | MKKYEVKLEVMAEIEAFDEDDAKDYISDIFGVDDEIKFIKILNIKEK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |