| Basic Information | |
|---|---|
| Taxon OID | 3300024262 Open in IMG/M |
| Scaffold ID | Ga0210003_1010450 Open in IMG/M |
| Source Dataset Name | Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6402 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (27.27%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Baltic Sea | |||||||
| Coordinates | Lat. (o) | 58.622 | Long. (o) | 18.254 | Alt. (m) | Depth (m) | 437 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F013325 | Metagenome / Metatranscriptome | 272 | Y |
| F038691 | Metagenome / Metatranscriptome | 165 | Y |
| F059026 | Metagenome / Metatranscriptome | 134 | N |
| F090614 | Metagenome / Metatranscriptome | 108 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0210003_10104505 | F059026 | N/A | MEYIKGYKLFKESLDTEAINEAFSSSILRDLSSQSRGKWGGNLAKDMQKYANLALDKISDSDFTTTSPEAYWQGGDAKNPNKIGFFVDDDPEFIKWAKANKKFLPGDLNLGNISNYGIVLSVVRGGAGMWHGFATDRGGSYSRHRKGTEERYGVLAKEYDTNQVYRGYEGKNVVSKITRKNLIDIATRVYVLDLDSLRDKYDVKGLVNDRADSKAGATALKSAKDIKNSNRQRYEAILKDKAAMTDIDQAVKDSMELLNSHITDAITKGEMDRSGNFLIGIDKRGRGITVSDGANFLKGLLDDYQRYHDYKNQQAEAEAEGEGRAWYGDYVKDYAKRVTDRSKKIADKNYAW |
| Ga0210003_10104506 | F038691 | N/A | MGFHRRHIDNDQVVRLYEDGGLIRIKEWYTQGVDALVTETGLASQVGSILSDDDWIVMGTQLQEKEIIKLIQKYLGIVDSKK |
| Ga0210003_10104507 | F013325 | N/A | MGKIKTIDQSESPIAPNFEGKRGTPEEQAALGKEVINENPRKMSEIIKDKREALKKNEDLLRQLQTNEYDIPMSSPKLYKQLMKFLEKDADWGHTTATGLVMLYSNLRENSKAVQAKEWDGIVKLRGTSITILWTMVTSMKGRGFFEARNFIELMAAFGQDLSQVVQKVHIDNQELRDNHVKLSELDNEVNHPDVILDVAIDEYNEADQELTDLMNEVDPIVESV |
| Ga0210003_10104509 | F090614 | N/A | MIKLIRKVKSWFQVKHEGEFPYSPEGFVKARRWAKNQPHPKLPDHPSQSLWNYVESNWIDSEYKLHEINKVKTKQNKSI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |