NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210003_1001229

Scaffold Ga0210003_1001229


Overview

Basic Information
Taxon OID3300024262 Open in IMG/M
Scaffold IDGa0210003_1001229 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22741
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (82.35%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)58.622Long. (o)18.254Alt. (m)Depth (m)437
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031354Metagenome / Metatranscriptome182Y
F059653Metagenome / Metatranscriptome133Y
F091296Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0210003_100122929F031354AGGAMKTTFDINDILFPVINIASVQTTIDGRVYRNKKPLNSELQDIVIIPLSNYNGDEIINDATFMINCHCKNFNNGTPNITKLRAIADAVIAVIEAYNSTSKYYVFDIVNQILLNDIDQKSMSYVNLRISCFIEK
Ga0210003_100122931F091296GGAGGVIERYPHTATLSYFTPGTTNSIGIYTEGTLVTIGIVCNAQPNSTKYIIGESGDMIGYSWFVSSPIFAGAGDVPEAAKLTFFNKEHIILQLFEYQKHIEMKC
Ga0210003_100122932F059653GGAGMTNKEALQSQTEYKNDNLLEKLLLDRGVATGGTYAAANAKDIDLCAANLYFTLAAHPDLREGAFSVKYNGAQLNAMAKTILKKYDMDKPTVSGEAIW
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