NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0233438_10007603

Scaffold Ga0233438_10007603


Overview

Basic Information
Taxon OID3300024255 Open in IMG/M
Scaffold IDGa0233438_10007603 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_10_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)8359
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameCanada: British Columbia
CoordinatesLat. (o)48.5847Long. (o)-123.5008Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000379Metagenome / Metatranscriptome1211Y
F000681Metagenome / Metatranscriptome939Y
F000724Metagenome / Metatranscriptome919Y
F041486Metagenome / Metatranscriptome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0233438_1000760313F000379AGGAGMKIDYTDIEYYKKIDYENKHGMMVGYIDGSQNVSAVQTGWDIKPEALSKLLLDKYPTREDAITVVDSPLLVPVFKKDDYCYVDEFGDVIESNLSWHKENMRKDVGHLFLFMKGTWQYSDNGIDWEPAKEAFVDTSGTAFTNIREALEMEVA
Ga0233438_1000760317F041486GGAMIISSIFGFILTVVGVNETAVAGYKVLTTANNIQEKKEQKLLEASLHEEAQQILKDVIREAGK
Ga0233438_100076033F000724AGGAGGMPSKKEKMWTMGNKGPTGPWVWHAWIKGSKKPVRVVAFDLDHIQCQLEGKTVVKAVKQPEEKDEFSSMPLGPKGSLINRPADYDKGFKILREWIDENGGPPEEIRIKLRELFIDYDKAKQKTTRYSARKKKRY
Ga0233438_100076036F000681N/AVITFKKVNDLGTSSQVDAITSHVIMNYNKGVENMYKRDQHYNEKISKADLEKELSTHYTGETGLVINLMSYAIQDGIVETRHELGCANEELWSLNDWPEGEGFGSSDRFEYVRRMTETVNFERSFLQAENELVQINKLEESPKNDTVRAYMRMNQKIKEGMVA
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