NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247669_1002330

Scaffold Ga0247669_1002330


Overview

Basic Information
Taxon OID3300024182 Open in IMG/M
Scaffold IDGa0247669_1002330 Open in IMG/M
Source Dataset NameSoil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4829
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From Purdue University Martell Research Forest, Indiana, United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)40.4449Long. (o)-87.0297Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012046Metagenome284Y
F015514Metagenome254Y
F017541Metagenome / Metatranscriptome240Y
F094230Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0247669_10023304F015514AGGAGMHRNIARAYDCLQEEHNRVRAACVKILSQNDRHLERVLLRADLDSPRHHDEMLLYEERLSRPQLRRILDLNRYGRRIEHIMDALRRL
Ga0247669_10023305F012046AGGAGMKKVKETNLAPRQYVPGRQYCWLRGKVVDWVEHRFEEGLLYIHVRFVDRTELCWRIATGLTIEEGDLSDWKSGDFEQLRVLVRNQRDRRV
Ga0247669_10023306F017541AGGCGGMKLALFQQILELNELFDRLTVRLERLESVSFSQRDLIQHARSDVEIARVYCNREFFDNFEPIVVNDAKSVYRFQRDFDKRLKDRDDIYLEVRDSEQKRNGLPPRVVILPDCDWSREDHYDERPSQQRKKSAPKKHWTAWTTAKESRNGVRRSRSVPRKGELRP
Ga0247669_10023309F094230AGGAGGMPAIAKRLPAKYLVKAEAPKIIASREQHEAYIQRLLELQRKAHRSAEEAETAQLLVVLIA
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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