NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228668_1000425

Scaffold Ga0228668_1000425


Overview

Basic Information
Taxon OID3300024180 Open in IMG/M
Scaffold IDGa0228668_1000425 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 82D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18304
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (93.10%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017226Metagenome / Metatranscriptome242Y
F066749Metagenome / Metatranscriptome126N
F067629Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0228668_100042511F066749GGAGMKNNEYHGDEHILDEDEYPPMQQWEIDEALADILGDDRWLQRQQEKAE
Ga0228668_10004256F067629GAGGMKTKGEVIRFKLEFMALMLASGRTEHAEDVLQEALALCDTITEQMPEEAA
Ga0228668_10004258F017226GGAGMMKAHLHLIKWAVARGYSVAVFGEGEYDGIHHTYKEIKDTVEACDMGEMVLVKPSVKTEGKWSREASFAYMFDYNQYPDEIIYDYGVNEISEAWATDYESTRLEAA
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