NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222655_1048249

Scaffold Ga0222655_1048249


Overview

Basic Information
Taxon OID3300023245 Open in IMG/M
Scaffold IDGa0222655_1048249 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #423
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)649
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040489Metagenome161Y
F098756Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0222655_10482491F098756N/ANTCEALVLMGFGTEYAFVAKNGLDALLEVCKRGMRTDHYILKAVEMQTLDEAMQLHDEQLGIVTVGELDRSQRIVRDVLRSKKAKVINDKDKVK
Ga0222655_10482492F040489AGGAGMTREELMADSTQYCCYCGGEKVRFQCCGENHFQTFSQMSAEEQDEFLDNE

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