NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10499339

Scaffold Ga0214919_10499339


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10499339 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)750
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013085Metagenome274Y
F016809Metagenome / Metatranscriptome244Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_104993392F013085N/AMEILSEIIEASNHMIDALEETDFFVETPFIDRIPLKRALQIAMQRKWEQEDDMFLNDAEFLEVCQSVSNKSIGKTIEDLVDKGALNMSINEDGEILYSANKDFKWESDEDEIQ
Ga0214919_104993393F016809N/AIIMSKTNEEFMKQQLTGSIGGDEDFLYEQYIAQEQMNEEYWQWKSVQSHSIFPDEVQYDDEYYKSSYLPTPDEEAENYKQTKQNGNT

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