NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10173901

Scaffold Ga0214919_10173901


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10173901 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1664
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010317Metagenome / Metatranscriptome305Y
F019468Metagenome / Metatranscriptome229N
F027823Metagenome / Metatranscriptome193Y
F041755Metagenome / Metatranscriptome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_101739011F019468N/AYKLTIKDVYYYLDEKELNALYEQCRMVLNIKDLPTTNPVKPTIPYPYDTYPWYTPKYPNDTGTPYWTGPTTTCGTIKAGEGICVMDTNWQPNLCNNVKSSNDINFLSDDMAVHEDNQKWRSSVQQALDKLKADKKV
Ga0214919_101739012F010317AGAAGGMKKIYIEKLAEVPGGLPARSMEEHIDGQYQGDSHSIPVEYNLEGELSYDIEVGKPVVVGRTKRNGVEAYGVFSTSRVTEVGNNYFKTKNSVYSYKFL
Ga0214919_101739013F027823N/AVNITAAKDVPCVSQTNLWKGCFEAHFMSGREIDVKYPILNTKWKYSHHKLRDDYDGYYYAYEKDIGTGIMFDPWLRELKVNMRISDDVYKTKMYHTTVESNPILLVLYKKKD
Ga0214919_101739014F041755N/AMNITAAKISGKEIHEKYPILNTKWKYSHHKDAWNGYEGYYYSNYKDWSTEVVTDPWYRNLINNGNPINTTESESMFSTTVEGNKIMLIIYLKTYV
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