NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10051459

Scaffold Ga0214919_10051459


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10051459 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3932
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (54.55%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000141Metagenome / Metatranscriptome1941Y
F004279Metagenome / Metatranscriptome445Y
F021981Metagenome / Metatranscriptome216N
F029438Metagenome188N

Sequences

Protein IDFamilyRBSSequence
Ga0214919_100514593F000141AGGAMKHAQFKCNGCNRDTEFLWLEALVIGEGFKAYQCMSCGCVGVKNIAEALHTPDADVCRCDKCGSWMFAAAECHTCLLVSSK
Ga0214919_100514594F004279AGGAGGMSHIEILTGSGFTLRMENDKQTLTPSYDLCIACNDDRLIHSGNYLVCVSCNTRQ
Ga0214919_100514596F021981N/AMPTNTEKLFNAATTLVHERGVVYGHAIYNMQRISKSVSAYIDFPIMPHDVPIINVLQKISRLAESPGHDDSIVDIIAYMAIYKMCIDAETDGEFEFREGE
Ga0214919_100514599F029438N/AMTNTRKPKVKRKKINRRVVRNSPEPLSKLDVHMITAHEIYKAAKKAGFSNELAWWFVQEPNAMPDWIANDKPDAIIPNIPTPDEDED
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Institute for Fundamental Biomedical Research
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