| Basic Information | |
|---|---|
| Taxon OID | 3300023184 Open in IMG/M |
| Scaffold ID | Ga0214919_10039540 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4717 |
| Total Scaffold Genes | 12 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (100.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000821 | Metagenome / Metatranscriptome | 876 | Y |
| F001477 | Metagenome / Metatranscriptome | 687 | Y |
| F003784 | Metagenome | 468 | Y |
| F003863 | Metagenome | 464 | Y |
| F004110 | Metagenome | 452 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214919_1003954010 | F004110 | AGG | MPSITLSLSKGLLVSELHPVIYDLVPSVANTIYRRYNKHVEKDDIKQELMAWAMTRAADHTEDLMEPIEERRRHNEQRIAWQMRRVAERYARKEKASKSGYQTNDEAYYESATLGQLLPFVIASIIDGTVLEQAQEMINDGQPKGSSSPAEGGNLLANLIDIKKGFLQLEQDDQALLRMRHHEGFTLQQIAQVLECAISTADRRCDKSLRRLQDNLGGVSPWQ |
| Ga0214919_1003954012 | F003784 | GGA | MYDNDRERVGHNATDFAAYGLSHLAAGQSNTTHTHTPTTNPLVDHAAVTGYRAVGVSTEDLTSFIESFASLRAQRVKGVGHSQYAIAQGQKFESFTTSDTIRELIEELADASNYIDFLAIKLLNIQHTIDQVLPDCE |
| Ga0214919_100395403 | F000821 | AGGAG | MNEEYLAAKANLCLNQAEKDIKQEEIARAIKNLERANSALYRLGLVKEGEADE |
| Ga0214919_100395404 | F001477 | GGAG | MSNIYTIHPKKSPLILLYEVVDEEGRAEWGGNNAEHCMQWLSLAPTGSRVLVSGWESDEEDAHLVGQTLDITEIVRAASL |
| Ga0214919_100395405 | F003863 | GGAGG | MESKEVSGKQSIHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKSWIINPDSRLTIAVHTRANAVPDVAGRTDYESADESYNGGEA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |