NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10039397

Scaffold Ga0214919_10039397


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10039397 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4728
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008741Metagenome328Y
F009142Metagenome322Y
F030060Metagenome186N

Sequences

Protein IDFamilyRBSSequence
Ga0214919_100393972F030060N/AMTKGIVTSESPEIHWQHLNVAGGRVLDLGCAFWTETERQEANGTTKYFLSQKPEFYMGVDINQGDIQTLSQQYPQGKFLCEKADSAFQIDVWITENSITHIKCDIEGDETQLMQIGNVHNLKEIAIELHYSDAWLKEFMAWFDSIGFECYRHDSVSFCPEISVIYGRLKC
Ga0214919_100393974F008741GAGMSVKTIKYSQRLGDVLRCLPAAKHLADQGHEVFFDCLPQYHSVFDLISYVKAGSKGDIIDLEVWPNRYEEYRKSKRSWTDFVYSHPEIKDADKTNIILDKLDDKPAEGLPETYNLVAAFGNSQGFYRNPLDIITKARTDMGKDNFYVMTPPEIQIQGLSTYTAPSVSEMAKAIRGAKDFWAINSTPIILASVVRRGKPTAFFPQKNEWETDNIFDFEGMFRMD
Ga0214919_100393977F009142N/AMNNSVQINVEDALENLLANIPNLNVYKTNRVGAKLFPSATISASVGGQLLGNYTGVYEVAVTIDYSDTAAKISQEAFDSEYCSIFEAFYSETTPLFSKIQNNIIDTKVYTARITGQTPTIKTAKRAWQRGLRISLICTPSELDDGLRSLNFSQRQNSMYVAVI
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