NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10021864

Scaffold Ga0214919_10021864


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10021864 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7095
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010016Metagenome309Y
F014840Metagenome259Y
F050979Metagenome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_1002186411F014840N/ALACWGDNKISIPFSHAIIDDAGEIIRKFRWSAKEAKWHKDKGENVIKLEVKKEPEEDLFKLVGECLF
Ga0214919_100218646F050979AGGMATAKTQVHKSRRHADPFKTRTGKDKLKALPVKKLYELLDKAEVGKKKAKIAKEIARRTP
Ga0214919_100218647F010016GGAGGMKKTAQNDITGDWMQSKPNNEQFEKNWDLIFGKKVETQILEQQEIQEAVSDIEYELNKSTGEVQKVENGNS
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Institute for Fundamental Biomedical Research
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