NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10011844

Scaffold Ga0214919_10011844


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10011844 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10818
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (65.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000403Metagenome / Metatranscriptome1177Y
F002433Metagenome / Metatranscriptome559Y
F003182Metagenome / Metatranscriptome502Y
F010982Metagenome296N

Sequences

Protein IDFamilyRBSSequence
Ga0214919_100118444F003182AGGAMPILEFDCSICAKLYGKAKQRHGIRKTPELTLHEWFATCLGCGAMGIKLVDDDKVDGLSL
Ga0214919_100118445F010982N/AMVRLSREDEIIAHTSGLARESRYGSNPKFNGNKGNFHNAVVIHAEAVGAEMAVARYFEVEDFVPTVNTFKNEPDVNWNGVALEVKQTSHKRGHLIITEDDRDTDIAVLVVGESPTYYIMGWIPVGVAKRPRFASAQGGYWVSQINLQPIETLRKSSHADSRI
Ga0214919_100118446F000403GGAGMSDFMEMIDMKTRMCKLLENGKVIQEYKVEQCDKCSSWVKFDEFGYQKGFGNEKIIWFCAGCR
Ga0214919_100118449F002433N/AVSVGEWTAVGGLVIAVLTAIYSSMRFMVKSIMRELSPNGGNSLKDQVSRIESRLDQLLLEIALKK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
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