NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10006133

Scaffold Ga0214919_10006133


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10006133 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16643
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)43 (95.56%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008750Metagenome / Metatranscriptome328Y
F011292Metagenome / Metatranscriptome292Y
F068756Metagenome124Y
F071151Metagenome122Y
F091642Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_1000613312F091642GGAGGMNEEKFWLCVWGMVLTFLAVVALCITFNAYGKRDKWEKAVSNGADPMVVSCALNDIAGGADAAICTILVQGRK
Ga0214919_1000613313F071151GGAGGMNTCCDYGKCTNSPDCPVRKQRIKEINDAYANGFKDAQLNDPLDDMAETFKALLTMVTVVLCGWIAFLLFWGK
Ga0214919_1000613314F068756GGGGGMNEQTYGFGLVPIVTEGGISDPDAYTWECDCEICKERYKNWKAKFDAEQKQLGGEE
Ga0214919_1000613320F011292GGAGMTPNSYDIDTAKEIVGDARMRIIEAKARQDADNGVRDGMAHVKREAGYWDRVVQSMELVVYDAAYRKRLERIQRIKEKENT
Ga0214919_100061338F008750GGAGGMNKLLALMREPFRKPSPLEVIATELAHAHLEKLEAETAVEYAQSVVDYNVNRIARLNARMEEYK
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