NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10004129

Scaffold Ga0214919_10004129


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10004129 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21390
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (57.58%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006891Metagenome362Y
F007911Metagenome / Metatranscriptome342N
F057981Metagenome135N

Sequences

Protein IDFamilyRBSSequence
Ga0214919_1000412911F007911GGAGMAAVTMLDRLIEAAFKELVSPVVTAPTYHLSHDATENVPPSIVIKASMGSEEPVRGSGVFSIPVEIIFDESYDDATPTSHSAQCSKILQCFYDATNLSARLNATTAIGSARTYSAKLESSEASADNEERSYTQNYKLTVIAFPGSIAS
Ga0214919_1000412914F057981N/AMSDTLEQDLDDAFIAPDTYFKGEKLAPYTEGSRLLMLQVRDEADSAIYFVWSFVYIHILLAQDRRAAIKLAWDRDAFREKLLDWSENMTEEDRTTASLVCSSVLGAANKARVNVIPSALVEAAPPNA
Ga0214919_1000412926F006891GAGGVSSDQVVELSERLALVRESIARIETRQSVILEVLERSQASLGEYHGRLREMENSAHSLRTKIWLISVCAGAACSMIWELVKRRMGL
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