NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10003378

Scaffold Ga0214919_10003378


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10003378 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24158
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001562Metagenome / Metatranscriptome670Y
F002489Metagenome / Metatranscriptome554Y
F004431Metagenome / Metatranscriptome438Y
F024319Metagenome / Metatranscriptome206Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_1000337821F002489GAGGMNEEEVAPSALEDNLPMVTYIMLHRIYDLLTLISNKVVGGDDTQKMVEYHEQGFLLGPNPSYNTGEQNE
Ga0214919_1000337830F024319AGGMTNRIWESLNDYTLDSDAKRLGYVACSAGCGRVTAWSLCVMCGGNYAEHNLVGVR
Ga0214919_1000337832F004431AGAAGMTITYSLWDGAQLLGAGLTANSADEMNKVVADLQKVSTNVVAHMRKVTQN
Ga0214919_1000337835F001562AGGAGLKSQLERDIEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDPIAFSIGVIEHEDYMLERGELDDEEM
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