| Basic Information | |
|---|---|
| Taxon OID | 3300023184 Open in IMG/M |
| Scaffold ID | Ga0214919_10001872 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 33834 |
| Total Scaffold Genes | 54 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 44 (81.48%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008072 | Metagenome / Metatranscriptome | 339 | Y |
| F009735 | Metagenome / Metatranscriptome | 313 | Y |
| F020318 | Metagenome / Metatranscriptome | 224 | Y |
| F042732 | Metagenome | 157 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214919_100018722 | F009735 | N/A | MTMQTGIVEAVSTKDVSTKFGTKPTFSMKVNGTWIKCGFKNPNVAVGYEVEFDGVSGTYGVETKSVNILRKADAAPTPSGATTATAVAAPKAAYSGYKEKVFPIPALHGDRAIVRQNALARATDLYIAARGGKPFELEASTLDLVINLARKFEAYTAGDIDMMEAMEETQAISE |
| Ga0214919_1000187226 | F042732 | N/A | MSSNYSINRDQIISLALRKLGTLEVGSTPDAETIANANMSLNLLVKQLNTDGLKLWKVSELIVPLNASQTNYTLGGNGSDLMYDSLAPTVAITDRPLKVIQGFYRNVTSNPVIDTPVMIVSKQEYNVLGSKFSTGTANTIFYDSKKINGILYVYLTPDAYSEANLELHIIAQMPLNDMTLATDIPDFPNEWMNCLVWNLADQLALEYGVPMNARQEIATRAQTYKTQLDDWNVEVSSTFFQPDFRSTSNNSYGR |
| Ga0214919_1000187248 | F020318 | AGGAG | MEPVSPSNFDEWKHHPVTKRLMKSLSNDREAMKEGLVNSSFDDESEVKGRCRAIAIILNLEYEDLFEPTQKKEPSYE |
| Ga0214919_1000187251 | F008072 | N/A | MQRRVSKDKRYKKSHWTQNQKLQAVSTYLMLGSMAETAIVTGVPLATIKLWKQTDWFKEYALQLQAEDVQQMDSNLRRVINKALKATEDRLDLGDAQFDQRTGEIIRVPVKAHVALKITTELLTKQQKLNENPIKEEIEKTIDDRLLKLSEEFAKFASNKMSNAVPIDVEARIVSA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |