NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10001720

Scaffold Ga0214919_10001720


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10001720 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35376
Total Scaffold Genes62 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)49 (79.03%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003066Metagenome / Metatranscriptome509Y
F004547Metagenome433Y
F064504Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_1000172023F064504N/AMETIGEDKMTCQDMSLKLGVHYNRIKWVMYRLRNEDHLTSYKINDVTYYLKPKPHPLQSIFGHEVRFTEDQIKGSQIYNEKDAKHNLRFNPDQDSFYGSSIVGEGVKIGT
Ga0214919_1000172039F003066GAGVGGKEYNMNAVAWLYEEYDVKTGELLKSYLWSFHPNQLSYLNDLKNTTHHIKITPLFEGEPVEEYKGLSKYDSKRLTEAENGL
Ga0214919_1000172048F004547AGGAMKLLAYITGLLVLWVLLLEYPYAQEQIKEMSMKTESGEIVLTSQECIFKKMGLQGYEYAAYATELGHANHEGCWKSDSYEGKHAVYIYFPEINQTAVFDAKLFQPKASV
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