NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10000784

Scaffold Ga0214919_10000784


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10000784 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)54344
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (6.06%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012010Metagenome / Metatranscriptome284Y
F038081Metagenome166N
F096527Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0214919_1000078416F038081N/AMILNKQEIKNILSMLLSEDKENAVIAFSCLYNYASKKYLGELLVLYQFGRISAEEWEKECKKVFKLLKNVLKLDSKDYRLPSSTVFSALTSNKCSKESIELYLELFTNQLSNNLYNMGYPTDKLEISVKIKDND
Ga0214919_100007843F096527N/AMPQTFTEIADNAIINIKLNKSFYFMLKNLGFTLYKLMSQEESQIFNELMQKKDNKLLPDYNTLSQSQQNFYTVMLLLAEIEKEAISNNLTQSKEVLMPEDEGFNPENIQKEFDIPDPTTQ
Ga0214919_100007844F012010N/AMTEIFIKLAENKITPNSFYVLNCIKENIIPNSYINAELETKKLISENWLNKDLTLTDKSIIFVTGINSYFKSSKKKTSQNLLGIDFINKIQEYVETFPNKKLSSGKYARVNPKNLEVAFRWFFENYNYDWNIVIAATEKYVDEFSIRNFEFMRTAQYFIRKQGIDKTYESDLANYCDIIINGSDEEQVYFKERIV
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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