| Basic Information | |
|---|---|
| Taxon OID | 3300023184 Open in IMG/M |
| Scaffold ID | Ga0214919_10000588 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 61786 |
| Total Scaffold Genes | 102 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 69 (67.65%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F013393 | Metagenome / Metatranscriptome | 271 | Y |
| F021050 | Metagenome | 220 | Y |
| F029985 | Metagenome | 186 | Y |
| F030372 | Metagenome | 185 | Y |
| F050889 | Metagenome | 144 | Y |
| F076849 | Metagenome | 117 | N |
| F102401 | Metagenome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214919_1000058825 | F013393 | AGGAG | MRHVSGFSNSTKIRFIINGFGMYGTINDIYTKTATASHGAALRLAIQKLAYDRRHSSFSGEGRPVGVSITHEGHNVQITLMAN |
| Ga0214919_1000058835 | F102401 | N/A | MFWQHSQTVSTFCTAKALYTSMRHFLIIAALIATGAWAHVPVHMNTDQVTRPRVPRIKLLRSNPHRFTAIRLQGTDPYDAPDDDYICTNLNRRPKVAPPADSADDELSPYVQVRLAVARSRAMARYREIHA |
| Ga0214919_1000058842 | F030372 | GGA | MNKQTKQLAEQAGFVLDELPDSVLQPLETFADLLRAANTREVIALCANTINNNLNEQKQRTKHRWEIVEALVIILLLIVWATWWYIRLHA |
| Ga0214919_1000058848 | F076849 | AGCAGG | MLDAMWACESAEEYLNWYHLLDAEDQEMADVLQRMIILETMDEMLEEVSDGYTDIRSYLKKFML |
| Ga0214919_1000058875 | F050889 | N/A | MKNLYSTPEARLDTILGEVSFWARMQRCRTSEEGEKNCTTGADTITWFRDTWGIQLLPSDDTIFGFQRQVNIVDEQKYMIFLLKWA |
| Ga0214919_100005888 | F029985 | GAG | MKKYGAVYRTVILVLLLILCCSAIVSSSPMYGGNRPSVAQELPAREREVRLNHGVAECVRTAWIGDVNRRTLICVKYRLKKEVK |
| Ga0214919_1000058893 | F021050 | N/A | MIRDWDINKVIWECQKMYRAANDPYMTGFVNWPCKQDLYRVKFAVDEMLRGIGHFAGETEWLDEQEKLKMWKVLKDGN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |