NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10000027

Scaffold Ga0214919_10000027


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10000027 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)212614
Total Scaffold Genes267 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)190 (71.16%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006099Metagenome381Y
F010999Metagenome / Metatranscriptome296Y
F094799Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_10000027170F094799GGCGGLRNPEYSHGMTLDWNDSYNEMLRWNEMMANVVQVFGLPGDRYITDVNVNDMTFWFRDLHDALLFKLSHGHSRLHPA
Ga0214919_1000002726F010999GAGMMRPYSEVAAEIAQRNANNYVPPAVPSVKQTPVEIPGVMYQARELFQPIVSKPEGDK
Ga0214919_10000027262F006099AGGVSTVAQLPKERMTSARILYLARYRVPHAIMSLQPEFANNLIGIDRTCIASPVPKEELWPVFEKYGIDTSKLDYAPDSEIYRIYPEVNNWVFDGDYRTYWLRQQAIKFAFLDYLNYDLMIMHDCDCLLIKPYEPMKDGVLNFQVLENERHSWGYYESIKNGLGFERLTPHCFISENVPVLKQDFNDLVKFLEERHQKKWLDAMIDSCPPEPTVPPWGNGELIRWFSEYEFIGNWTMSRRPITMEFQRRYHYDNMEAIGDFDPDYHTAVCDAVPDLRFSLQMDWDKQEVVRFDYYMDKIRERLARLS
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Institute for Fundamental Biomedical Research
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