NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255768_10038402

Scaffold Ga0255768_10038402


Overview

Basic Information
Taxon OID3300023180 Open in IMG/M
Scaffold IDGa0255768_10038402 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3689
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023755Metagenome / Metatranscriptome209N
F059023Metagenome / Metatranscriptome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0255768_100384021F059023AGGAGMDNNTEKKILTFANELGGITRTDMVHGTLYIKLERDSDCDYIHREIRNYYREFINPEGGVNMYAVGDEFAFDFVPEDRETPVFMDEDQDEEEEIKLT
Ga0255768_100384027F023755GGAGMTDKINMVINLSILALLIYLAVQVHELQNPPKHQPAMMGYDNSLELRYNIQEFLNNALKQAITEQESQ

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