NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10080436

Scaffold Ga0214921_10080436


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10080436 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2581
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001460Metagenome / Metatranscriptome690Y
F007468Metagenome / Metatranscriptome350Y
F009685Metagenome / Metatranscriptome314Y
F033433Metagenome / Metatranscriptome177Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_100804363F001460GAGGMLGYTESDLNRMINAIHDSKLFYLRYPSDLMDKEPLRKDLEDAVSFLQGLWAEGYFDHTD
Ga0214921_100804364F007468GGAGGLTTPTKSSYFLEYMKIYLISLNQDLEDNYNVQSKINIQGQIMATEHLLSVATDIMNNSNERYNNE
Ga0214921_100804366F033433AGGAGMNNKPSLEILEVNYSCSPGGVDEFEVYSLDERDLLNPPLFTSTILEEAVRYCYNLGKDFTVRTVAEWEERELAYEASR
Ga0214921_100804368F009685GAGGMKMSDQYVDSVLAEAQRLLWGGSETENIEAHNLISKLIKDRMSEKILK
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