NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10061897

Scaffold Ga0214921_10061897


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10061897 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3152
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037064Metagenome / Metatranscriptome168N
F041011Metagenome / Metatranscriptome160N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_100618972F037064N/AMERDESKFVIKYASHMLPSVAHGITRFDACFYAGEGYIATVLYEGFAVDIYCDGDTKIYNPKTEQYYRGGADLILGGFDTDTKFHKATEDESLVMDMNSWFDLYCYGEHLAAVSHMLDDAIGSAKDYVYQEYFWAETLLDMPDMLDK
Ga0214921_100618973F041011AGGMHTCQIMLVEADSAEQALSYVKGTITHAETPYPAWSDWHGGLGEGLAGRWSGLFQGWEENQDVLCYTENKVLADDIIKEFVSYRITEAKNLWDEMKKGNGFDVEKSISEYNPYEQRFDDSGMNMWRLQRISKILNNDWCSDTGVYDLQEHTANLQYFKDRLDKNPEKQYLVPVDFHF
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