NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10061568

Scaffold Ga0214921_10061568


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10061568 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3165
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (18.18%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010897Metagenome / Metatranscriptome297Y
F032572Metagenome / Metatranscriptome179N
F035215Metagenome / Metatranscriptome172N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1006156810F010897N/AMKLINTTSYCSEKLKEIIKWCMPEGVFLKDIRKIDFGNTKLNWHGRAWGSMRVHIGVPRYGKYLRPYNTGGRKGYLNVETYSWEEGLIELIAHELRHLYQWKKGKYYHGIKKIRKYNMGTRAKLCEVDASLYAKRKVREYRKGDFKLNLV
Ga0214921_100615682F032572N/AMNSTYQYIANYINKPTIFCYILDRVVNNNPYLFTGEYNEKLINKKVWMAKQVFPHCEPTQYTYFKTFKEAKDALNRWGAKWERV
Ga0214921_100615689F035215N/AMSRKKRRMKMKSSEQITKEINDRIVEYKTLQVEHDNNQDAVNLLESAIHELEHLLEWINE
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