NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10039738

Scaffold Ga0214921_10039738


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10039738 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4372
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050992Metagenome144N
F062576Metagenome130N
F066595Metagenome126N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_100397382F062576AGGMMTIELPNSWHDISIEKFPLIYDITRDKDIDPIDREIRVISILTGITVAEVEKIRIDQLKELINNVNFIFKMEFPNSVEMFKHNGYRWIVNYDITKLSAGDFISLSKLTESEESIIGNLPKLVAMFVKPYKLKWFKLKEVEMDYEEKVEHIKSINVGIVYPLCVFFCKVIEGLYPHIEDYLVKQMSEARMTVENELNELKNKNT
Ga0214921_100397387F050992AGGMNEEIKQSLLNWESMGKNYSPNFNYTELNEIAIKLGNKPFNLGCSECRRQLLEYLLATIKDGTSK
Ga0214921_100397388F066595AGGMIQLLATTYIIAKFIPKPLWLHRKPFTCPLCLTYWSFLIYQIINFTNYFDLLTIPFTFALIASLFERINDRYL
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