NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10034172

Scaffold Ga0214921_10034172


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10034172 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4885
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (45.45%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006891Metagenome362Y
F014487Metagenome / Metatranscriptome262Y
F031026Metagenome183N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_100341722F031026GAGMLGGRIALLLISALALCSCATTQTQDGPPPSPDSISYFIYEWDKAERTNKPCPQAYRDLYAQALKALSDSLAETQRERARQ
Ga0214921_100341724F006891N/AMSTDQVAELSERLSLVRESIARIETRQTVILDLLERSQASLGEYHGRLTNMERDAHTIKTKLWLVALVSGAVFSTIWELIKRRISL
Ga0214921_100341726F014487N/AMPFLLITLLLCSCSPRPAENTGLPQYSDMSAAEDAGKAK
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Institute for Fundamental Biomedical Research
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