NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10030450

Scaffold Ga0214921_10030450


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10030450 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5309
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (73.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001599Metagenome / Metatranscriptome665Y
F001706Metagenome / Metatranscriptome648Y
F003862Metagenome / Metatranscriptome464Y
F004721Metagenome / Metatranscriptome426Y
F032951Metagenome / Metatranscriptome178N

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1003045012F001599AGGMEETVSIAWCDNGNVDGKFTQGMVDVLLHSGIKFETSMRSQGNQIARQREKIINYWYDNNKSDWLLWVDSDIVLSPKNFLRLWKKKDALTKPLLTGVYFTSDTPEEPLMIPMPTVYEFAEVDGVFGIKRLHPLPIDKFMKVGAAGMGFVLMHRSVVEKIKQEVPGVPLFTEAGVGKQFTGEDIYFFALCGKAGIPVWCDTGALVPHMKRFSFDEHYYKAFMGTPEKEKPKSKIITPR
Ga0214921_1003045013F004721AGGAMALGKEGSSLNAELNRLAGTIGKANQGAANAYASTTGKGLIGALNIKASASRQPSAYKNLNAVCNELAGTTGKEAVVALRSINV
Ga0214921_100304502F003862AGGAGMATYTFLTPTIEQGLIGGHRLFQFFTQRTKGLTVINNAGVYSLTQYPAQDDLETYTAYYMGGLIHTGITDAVRTAMIAAGIGITASNFTAE
Ga0214921_100304503F001706AGTAGGMKHWEHHPKPIEGCFGCKGLGLQMNSGDAGRDIPDKKWNSELQAYRDARSQGIQPAGTRMKDIVAAHKASETLGKAYNSETMPKAKDINKKSVEVLKEIGQI
Ga0214921_100304508F032951N/AMSSGQFVRSDGFNKTIMRDGLIFTLRKDGTVKVQRDPKTGDIIKGNK
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