NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10025609

Scaffold Ga0214921_10025609


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10025609 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6020
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (23.08%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004723Metagenome / Metatranscriptome426Y
F008080Metagenome / Metatranscriptome339Y
F038674Metagenome / Metatranscriptome165Y
F047570Metagenome / Metatranscriptome149N
F065779Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1002560912F004723N/AMKKGDKFIHTDIIGRKYEVTYTGLRREVKGCEFEFFVDNKGDSCFFTDTEVKKMEKKD
Ga0214921_1002560913F047570N/AMTDENKLKIATLSHNIKALCYILDKKTFSEHCVTSGTFTEIDSLFELVKELK
Ga0214921_100256092F065779GAGMSSPSVTVSVNLKIKDQEITLSMEEASDLYSQLKGILGYNHQPYTVPYPWGNPSPYCTYTINCSDSTNSNWKTA
Ga0214921_100256093F008080GGAMLKIQIWMRGTMEYSQDTIPGPIPDQTQEQFEEAFKESDDCYWGGDVYETCPYFDNDKRDSIDVYLGGDDNINNDEKPVFVTSNWEDFEFEKGGGSNYVPEAPDKLGEVNIWWSHDMKFNYVYFWNNFTEFDPNKLKIQYGVDQKGNKYLEDLIYDGEFPDDYNDFGDTGYGYNGPEFVYHPEQKFAEEQED
Ga0214921_100256094F038674N/AMDRKGFFKTLFGGFVAASAAPSLIKAEETPQPPKDLSLSREVLRIDEHGNLGIGGSSNIGLGTHSPQSKLHVQGIIFHINDRRLEMAGDENGDFKIHWLDPKENETVNAILIPKPKDDPWKTNSIAIH
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