NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10018411

Scaffold Ga0214921_10018411


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10018411 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7653
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (61.54%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006893Metagenome362Y
F013082Metagenome274Y
F086632Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1001841113F006893AGGAMENSIIKNISEITKKVLCNHKLYKDLDFFEVPHNKVCLAVIREITKLSYNDIGKAYKKSWFTIYSAVKDTNKNGLKTFTSKVIDLVKAEVK
Ga0214921_1001841120F086632N/AMKKTVDIGILKGCFEILKKYFIVQEFTSVYKITESEKQLYNKLAKIIEGKNVK
Ga0214921_1001841124F013082AGGAGMKTVQQEINRLLLESKTNKWIVSNEAPYYYDLCSVEDKTITLDEFYKSFPYHNPDINCEYWKTQHKRWKDIWKQDVV
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