NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10013012

Scaffold Ga0214921_10013012


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10013012 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9840
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (91.30%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003784Metagenome468Y
F035651Metagenome171Y
F037113Metagenome / Metatranscriptome168Y
F037608Metagenome / Metatranscriptome167Y
F068601Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_1001301210F037608AGGAGGMSNVIAFHPRKSDLVLLYEVVGEDGKAEWGGNSEADALAWVASSPTATRILVSGWESDEEDAHLVGQPLDITAIVREASR
Ga0214921_1001301212F037113AGAAGMSKWTVWVGGSEINWQHYTHRIDAERIAEFWRKVKGYDDVVVEEVA
Ga0214921_1001301215F035651GAGMSHYDGDSWSNHVLNEVKCAECEEYFDDQEGEGNICPACIEKGESK
Ga0214921_100130122F003784GGAMATDDTDFAYYGLSHLGDEYRRRNDNHKPNENPLSDHPAVVGYRAVGVSTEDLTSFIESFASLRAGRVKNVGHSQYSLAQGQKFESFTPADTIRELIEELADASNYIDFLAIKLLNLQHTMDLVLPDCD
Ga0214921_100130128F068601GGAMKIEESQENIVVLSDIREGKLRALSPYGPVKAGLTTLPKINEEVRLMELLNSLESVVHDLNYKSFTVYDTLNTAIEGARAALSAGTQDTTGTDETP
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