NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214921_10008459

Scaffold Ga0214921_10008459


Overview

Basic Information
Taxon OID3300023174 Open in IMG/M
Scaffold IDGa0214921_10008459 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13337
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (76.47%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001106Metagenome / Metatranscriptome776Y
F001229Metagenome / Metatranscriptome741Y
F003408Metagenome / Metatranscriptome488Y

Sequences

Protein IDFamilyRBSSequence
Ga0214921_100084592F003408AGAAGMPELIQTFKSMQKTEEEKRKFLASLQGINLEEDKTEGPTFEDIKRRALGINASGDDVLSLQGPFAQESGFGIGAGLGYSKE
Ga0214921_100084597F001229GGAMQDLIQSVLPMKLDVYRQLDTQDSDTGAIKKEWMFYKTVDCHAKGVISNSATTRSSDKQIFNNKYVNDQIIQIRTEDRLTPREKVTNIRDMSNNYIWVELDFPTETPTVFEVMGTTPITDPFGRVVGYNSSMKRSENQQIGL
Ga0214921_100084599F001106AGGAGVSFETLKISELKKVAEDFGVNTEELKNKTDIIAALSEEGVTWAVYQKTIKDIEDNLIEAPEQLIKFDPKKELSEDSVLVKMTRPNFRYDILGFTFTKEHPFVAMTKDQAQSIFDKEEGFRLANPTEVQSFYS
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